IL_5JCS_035
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CUU*GAACG
- Length
- 8 nucleotides
- Bulged bases
- 5JCS|1|x|A|2941, 5JCS|1|x|C|2942
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JCS_035 not in the Motif Atlas
- Geometric match to IL_2QWY_008
- Geometric discrepancy: 0.3437
- The information below is about IL_2QWY_008
- Detailed Annotation
- Single stack bend with SAM intercalation
- Broad Annotation
- Single stack bend with SAM intercalation
- Motif group
- IL_38710.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JCS|1|x|C|2881
5JCS|1|x|U|2882
5JCS|1|x|U|2883
*
5JCS|1|x|G|2939
5JCS|1|x|A|2940
5JCS|1|x|A|2941
5JCS|1|x|C|2942
5JCS|1|x|G|2943
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain O
- 60S ribosomal protein L16-A
- Chain V
- 60S ribosomal protein L23-A
- Chain o
- Nucleolar GTP-binding protein 1
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