IL_5JCS_038

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AUAAUUGG*CUACCAU

Length

15 nucleotides

Bulged bases

5JCS|1|x|C|3092, 5JCS|1|x|C|3093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|A|3046
5JCS|1|x|U|3047
5JCS|1|x|A|3048
5JCS|1|x|A|3049
5JCS|1|x|U|3050
5JCS|1|x|U|3051
5JCS|1|x|G|3052
5JCS|1|x|G|3053
*
5JCS|1|x|C|3089
5JCS|1|x|U|3090
5JCS|1|x|A|3091
5JCS|1|x|C|3092
5JCS|1|x|C|3093
5JCS|1|x|A|3094
5JCS|1|x|U|3095

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L23-A

Chain t

Ribosome biogenesis protein RLP24