IL_5JCS_042

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UAGCAACGGUGC*GUGCUUGCUG

Length

22 nucleotides

Bulged bases

5JCS|1|x|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|U|3222
5JCS|1|x|A|3223
5JCS|1|x|G|3224
5JCS|1|x|C|3225
5JCS|1|x|A|3226
5JCS|1|x|A|3227
5JCS|1|x|C|3228
5JCS|1|x|G|3229
5JCS|1|x|G|3230
5JCS|1|x|U|3231
5JCS|1|x|G|3232
5JCS|1|x|C|3233
*
5JCS|1|x|G|3254
5JCS|1|x|U|3255
5JCS|1|x|G|3256
5JCS|1|x|C|3257
5JCS|1|x|U|3258
5JCS|1|x|U|3259
5JCS|1|x|G|3260
5JCS|1|x|C|3261
5JCS|1|x|U|3262
5JCS|1|x|G|3263

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6-A

Chain M

60S ribosomal protein L14-A