IL_5JCS_045

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CAUUUGUAUACGACUUAGAUGUAC*GUCUG

Length

29 nucleotides

Bulged bases

5JCS|1|x|U|3304, 5JCS|1|x|U|3317, 5JCS|1|x|U|3319

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|C|3298
5JCS|1|x|A|3299
5JCS|1|x|U|3300
5JCS|1|x|U|3301
5JCS|1|x|U|3302
5JCS|1|x|G|3303
5JCS|1|x|U|3304
5JCS|1|x|A|3305
5JCS|1|x|U|3306
5JCS|1|x|A|3307
5JCS|1|x|C|3308
5JCS|1|x|G|3309
5JCS|1|x|A|3310
5JCS|1|x|C|3311
5JCS|1|x|U|3312
5JCS|1|x|U|3313
5JCS|1|x|A|3314
5JCS|1|x|G|3315
5JCS|1|x|A|3316
5JCS|1|x|U|3317
5JCS|1|x|G|3318
5JCS|1|x|U|3319
5JCS|1|x|A|3320
5JCS|1|x|C|3321
*
5JCS|1|x|G|3386
5JCS|1|x|U|3387
5JCS|1|x|C|3388
5JCS|1|x|U|3389
5JCS|1|x|G|3390

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A

Chain d

60S ribosomal protein L31-A