IL_5JCS_047

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUGUAAGC*GCUGAGA

Length

15 nucleotides

Bulged bases

5JCS|1|x|G|3369

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|U|3331
5JCS|1|x|U|3332
5JCS|1|x|G|3333
5JCS|1|x|U|3334
5JCS|1|x|A|3335
5JCS|1|x|A|3336
5JCS|1|x|G|3337
5JCS|1|x|C|3338
*
5JCS|1|x|G|3366
5JCS|1|x|C|3367
5JCS|1|x|U|3368
5JCS|1|x|G|3369
5JCS|1|x|A|3370
5JCS|1|x|G|3371
5JCS|1|x|A|3372

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain d

60S ribosomal protein L31-A

Chain t

Ribosome biogenesis protein RLP24