IL_5JCS_048
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- AUGU*AUCAU
- Length
- 9 nucleotides
- Bulged bases
- 5JCS|1|y|U|90
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JCS_048 not in the Motif Atlas
- Geometric match to IL_4PHY_003
- Geometric discrepancy: 0.3519
- The information below is about IL_4PHY_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49140.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
5JCS|1|y|A|66
5JCS|1|y|U|67
5JCS|1|y|G|68
5JCS|1|y|U|69
*
5JCS|1|y|A|89
5JCS|1|y|U|90
5JCS|1|y|C|91
5JCS|1|y|A|92
5JCS|1|y|U|93
Current chains
- Chain y
- 5.8S ribosomal RNA
Nearby chains
- Chain Y
- 60S ribosomal protein L26-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain x
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: