IL_5JCS_052
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UUUGAU*GUUAUA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JCS_052 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.3103
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
5JCS|1|x|U|429
5JCS|1|x|U|430
5JCS|1|x|U|431
5JCS|1|x|G|432
5JCS|1|x|A|433
5JCS|1|x|U|434
*
5JCS|1|x|G|625
5JCS|1|x|U|626
5JCS|1|x|U|627
5JCS|1|x|A|628
5JCS|1|x|U|629
5JCS|1|x|A|630
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: