IL_5JCS_053
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUCUCGCAUUUCACUGGGCCAGCAUCAGUUUUGGU*GCUGGGACUGAGGACUGCGACGUAAGUCAAGGAUGCUGGCAUAAUG
- Length
- 124 nucleotides
- Bulged bases
- 5JCS|1|x|C|439, 5JCS|1|x|A|440, 5JCS|1|x|U|441, 5JCS|1|x|U|465, 5JCS|1|x|A|478, 5JCS|1|x|C|480, 5JCS|1|x|U|481, 5JCS|1|x|C|482, 5JCS|1|x|U|486, 5JCS|1|x|U|492, 5JCS|1|x|G|494, 5JCS|1|x|A|607, 5JCS|1|x|A|619
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JCS|1|x|C|435
5JCS|1|x|A|436
5JCS|1|x|G|437
5JCS|1|x|A|438
5JCS|1|x|C|439
5JCS|1|x|A|440
5JCS|1|x|U|441
5JCS|1|x|G|442
5JCS|1|x|G|443
5JCS|1|x|U|444
5JCS|1|x|G|445
5JCS|1|x|U|446
5JCS|1|x|U|447
5JCS|1|x|U|448
5JCS|1|x|U|449
5JCS|1|x|G|450
5JCS|1|x|U|451
5JCS|1|x|G|452
5JCS|1|x|C|453
5JCS|1|x|C|454
5JCS|1|x|C|455
5JCS|1|x|U|456
5JCS|1|x|C|457
5JCS|1|x|U|458
5JCS|1|x|G|459
5JCS|1|x|C|460
5JCS|1|x|U|461
5JCS|1|x|C|462
5JCS|1|x|C|463
5JCS|1|x|U|464
5JCS|1|x|U|465
5JCS|1|x|G|466
5JCS|1|x|U|467
5JCS|1|x|G|468
5JCS|1|x|G|469
5JCS|1|x|G|470
5JCS|1|x|U|471
5JCS|1|x|A|472
5JCS|1|x|G|473
5JCS|1|x|G|474
5JCS|1|x|G|475
5JCS|1|x|G|476
5JCS|1|x|A|477
5JCS|1|x|A|478
5JCS|1|x|U|479
5JCS|1|x|C|480
5JCS|1|x|U|481
5JCS|1|x|C|482
5JCS|1|x|G|483
5JCS|1|x|C|484
5JCS|1|x|A|485
5JCS|1|x|U|486
5JCS|1|x|U|487
5JCS|1|x|U|488
5JCS|1|x|C|489
5JCS|1|x|A|490
5JCS|1|x|C|491
5JCS|1|x|U|492
5JCS|1|x|G|493
5JCS|1|x|G|494
5JCS|1|x|G|495
5JCS|1|x|C|496
5JCS|1|x|C|497
5JCS|1|x|A|498
5JCS|1|x|G|499
5JCS|1|x|C|500
5JCS|1|x|A|501
5JCS|1|x|U|502
5JCS|1|x|C|503
5JCS|1|x|A|504
5JCS|1|x|G|505
5JCS|1|x|U|506
5JCS|1|x|U|507
5JCS|1|x|U|508
5JCS|1|x|U|509
5JCS|1|x|G|510
5JCS|1|x|G|511
5JCS|1|x|U|512
*
5JCS|1|x|G|579
5JCS|1|x|C|580
5JCS|1|x|U|581
5JCS|1|x|G|582
5JCS|1|x|G|583
5JCS|1|x|G|584
5JCS|1|x|A|585
5JCS|1|x|C|586
5JCS|1|x|U|587
5JCS|1|x|G|588
5JCS|1|x|A|589
5JCS|1|x|G|590
5JCS|1|x|G|591
5JCS|1|x|A|592
5JCS|1|x|C|593
5JCS|1|x|U|594
5JCS|1|x|G|595
5JCS|1|x|C|596
5JCS|1|x|G|597
5JCS|1|x|A|598
5JCS|1|x|C|599
5JCS|1|x|G|600
5JCS|1|x|U|601
5JCS|1|x|A|602
5JCS|1|x|A|603
5JCS|1|x|G|604
5JCS|1|x|U|605
5JCS|1|x|C|606
5JCS|1|x|A|607
5JCS|1|x|A|608
5JCS|1|x|G|609
5JCS|1|x|G|610
5JCS|1|x|A|611
5JCS|1|x|U|612
5JCS|1|x|G|613
5JCS|1|x|C|614
5JCS|1|x|U|615
5JCS|1|x|G|616
5JCS|1|x|G|617
5JCS|1|x|C|618
5JCS|1|x|A|619
5JCS|1|x|U|620
5JCS|1|x|A|621
5JCS|1|x|A|622
5JCS|1|x|U|623
5JCS|1|x|G|624
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain E
- 60S ribosomal protein L6-A
- Chain F
- 60S ribosomal protein L7-A
- Chain P
- 60S ribosomal protein L17-A
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
Coloring options: