IL_5JCS_064
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GCUCAUCAGACACCACAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUG*CUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGC
- Length
- 127 nucleotides
- Bulged bases
- 5JCS|1|x|A|1190, 5JCS|1|x|U|1191, 5JCS|1|x|C|1192, 5JCS|1|x|C|1196, 5JCS|1|x|A|1197, 5JCS|1|x|A|1200, 5JCS|1|x|C|1201, 5JCS|1|x|U|1208, 5JCS|1|x|C|1216, 5JCS|1|x|A|1221, 5JCS|1|x|G|1236, 5JCS|1|x|U|1241, 5JCS|1|x|A|1244, 5JCS|1|x|A|1245, 5JCS|1|x|C|1248, 5JCS|1|x|A|1252, 5JCS|1|x|U|1253, 5JCS|1|x|A|1302, 5JCS|1|x|U|1305, 5JCS|1|x|G|1306, 5JCS|1|x|G|1307, 5JCS|1|x|A|1308, 5JCS|1|x|C|1316, 5JCS|1|x|A|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JCS|1|x|G|1186
5JCS|1|x|C|1187
5JCS|1|x|U|1188
5JCS|1|x|C|1189
5JCS|1|x|A|1190
5JCS|1|x|U|1191
5JCS|1|x|C|1192
5JCS|1|x|A|1193
5JCS|1|x|G|1194
5JCS|1|x|A|1195
5JCS|1|x|C|1196
5JCS|1|x|A|1197
5JCS|1|x|C|1198
5JCS|1|x|C|1199
5JCS|1|x|A|1200
5JCS|1|x|C|1201
5JCS|1|x|A|1202
5JCS|1|x|A|1203
5JCS|1|x|A|1204
5JCS|1|x|A|1205
5JCS|1|x|G|1206
5JCS|1|x|G|1207
5JCS|1|x|U|1208
5JCS|1|x|G|1209
5JCS|1|x|U|1210
5JCS|1|x|U|1211
5JCS|1|x|A|1212
5JCS|1|x|G|1213
5JCS|1|x|U|1214
5JCS|1|x|U|1215
5JCS|1|x|C|1216
5JCS|1|x|A|1217
5JCS|1|x|U|1218
5JCS|1|x|C|1219
5JCS|1|x|U|1220
5JCS|1|x|A|1221
5JCS|1|x|G|1222
5JCS|1|x|A|1223
5JCS|1|x|C|1224
5JCS|1|x|A|1225
5JCS|1|x|G|1226
5JCS|1|x|C|1227
5JCS|1|x|C|1228
5JCS|1|x|G|1229
5JCS|1|x|G|1230
5JCS|1|x|A|1231
5JCS|1|x|C|1232
5JCS|1|x|G|1233
5JCS|1|x|G|1234
5JCS|1|x|U|1235
5JCS|1|x|G|1236
5JCS|1|x|G|1237
5JCS|1|x|C|1238
5JCS|1|x|C|1239
5JCS|1|x|A|1240
5JCS|1|x|U|1241
5JCS|1|x|G|1242
5JCS|1|x|G|1243
5JCS|1|x|A|1244
5JCS|1|x|A|1245
5JCS|1|x|G|1246
5JCS|1|x|U|1247
5JCS|1|x|C|1248
5JCS|1|x|G|1249
5JCS|1|x|G|1250
5JCS|1|x|A|1251
5JCS|1|x|A|1252
5JCS|1|x|U|1253
5JCS|1|x|C|1254
5JCS|1|x|C|1255
5JCS|1|x|G|1256
5JCS|1|x|C|1257
5JCS|1|x|U|1258
5JCS|1|x|A|1259
5JCS|1|x|A|1260
5JCS|1|x|G|1261
5JCS|1|x|G|1262
5JCS|1|x|A|1263
5JCS|1|x|G|1264
5JCS|1|x|U|1265
5JCS|1|x|G|1266
*
5JCS|1|x|C|1275
5JCS|1|x|U|1276
5JCS|1|x|C|1277
5JCS|1|x|A|1278
5JCS|1|x|C|1279
5JCS|1|x|C|1280
5JCS|1|x|G|1281
5JCS|1|x|G|1282
5JCS|1|x|C|1283
5JCS|1|x|C|1284
5JCS|1|x|G|1285
5JCS|1|x|A|1286
5JCS|1|x|A|1287
5JCS|1|x|U|1288
5JCS|1|x|G|1289
5JCS|1|x|A|1290
5JCS|1|x|A|1291
5JCS|1|x|C|1292
5JCS|1|x|U|1293
5JCS|1|x|A|1294
5JCS|1|x|G|1295
5JCS|1|x|C|1296
5JCS|1|x|C|1297
5JCS|1|x|C|1298
5JCS|1|x|U|1299
5JCS|1|x|G|1300
5JCS|1|x|A|1301
5JCS|1|x|A|1302
5JCS|1|x|A|1303
5JCS|1|x|A|1304
5JCS|1|x|U|1305
5JCS|1|x|G|1306
5JCS|1|x|G|1307
5JCS|1|x|A|1308
5JCS|1|x|U|1309
5JCS|1|x|G|1310
5JCS|1|x|G|1311
5JCS|1|x|C|1312
5JCS|1|x|G|1313
5JCS|1|x|C|1314
5JCS|1|x|U|1315
5JCS|1|x|C|1316
5JCS|1|x|A|1317
5JCS|1|x|A|1318
5JCS|1|x|G|1319
5JCS|1|x|C|1320
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain H
- 60S ribosomal protein L9-A
- Chain K
- 60S ribosomal protein L12-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain S
- 60S ribosomal protein L20-A
- Chain T
- 60S ribosomal protein L21-A
- Chain n
- Ribosome assembly factor MRT4
- Chain o
- Nucleolar GTP-binding protein 1
- Chain q
- Ribosome assembly protein 4
- Chain z
- 5S ribosomal RNA; 5S rRNA
Coloring options: