IL_5JCS_067

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGCGCGAGCCCUG*CGGUGCGCUUGUGAC

Length

28 nucleotides

Bulged bases

5JCS|1|x|C|1779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|G|1661
5JCS|1|x|G|1662
5JCS|1|x|C|1663
5JCS|1|x|G|1664
5JCS|1|x|C|1665
5JCS|1|x|G|1666
5JCS|1|x|A|1667
5JCS|1|x|G|1668
5JCS|1|x|C|1669
5JCS|1|x|C|1670
5JCS|1|x|C|1671
5JCS|1|x|U|1672
5JCS|1|x|G|1673
*
5JCS|1|x|C|1774
5JCS|1|x|G|1775
5JCS|1|x|G|1776
5JCS|1|x|U|1777
5JCS|1|x|G|1778
5JCS|1|x|C|1779
5JCS|1|x|G|1780
5JCS|1|x|C|1781
5JCS|1|x|U|1782
5JCS|1|x|U|1783
5JCS|1|x|G|1784
5JCS|1|x|U|1785
5JCS|1|x|G|1786
5JCS|1|x|A|1787
5JCS|1|x|C|1788

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain g

60S ribosomal protein L34-A