IL_5JCS_070
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAAUGAAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCC*GGGCUGAUCCGGGUUGAAGACAUUGUCAGG
- Length
- 171 nucleotides
- Bulged bases
- 5JCS|1|x|A|2438, 5JCS|1|x|U|2453, 5JCS|1|x|G|2454, 5JCS|1|x|A|2458, 5JCS|1|x|U|2460, 5JCS|1|x|G|2467, 5JCS|1|x|U|2472, 5JCS|1|x|G|2481, 5JCS|1|x|U|2487, 5JCS|1|x|C|2490, 5JCS|1|x|U|2493, 5JCS|1|x|A|2494, 5JCS|1|x|C|2495, 5JCS|1|x|U|2501, 5JCS|1|x|A|2502, 5JCS|1|x|U|2514, 5JCS|1|x|G|2522, 5JCS|1|x|U|2532, 5JCS|1|x|U|2538, 5JCS|1|x|U|2541, 5JCS|1|x|U|2542, 5JCS|1|x|U|2543, 5JCS|1|x|G|2549, 5JCS|1|x|U|2550, 5JCS|1|x|U|2551, 5JCS|1|x|C|2552, 5JCS|1|x|U|2553, 5JCS|1|x|A|2554, 5JCS|1|x|C|2560, 5JCS|1|x|A|2561, 5JCS|1|x|U|2581, 5JCS|1|x|G|2586
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JCS|1|x|U|2427
5JCS|1|x|U|2428
5JCS|1|x|G|2429
5JCS|1|x|A|2430
5JCS|1|x|C|2431
5JCS|1|x|A|2432
5JCS|1|x|U|2433
5JCS|1|x|U|2434
5JCS|1|x|G|2435
5JCS|1|x|U|2436
5JCS|1|x|G|2437
5JCS|1|x|A|2438
5JCS|1|x|A|2439
5JCS|1|x|G|2440
5JCS|1|x|A|2441
5JCS|1|x|G|2442
5JCS|1|x|A|2443
5JCS|1|x|C|2444
5JCS|1|x|A|2445
5JCS|1|x|U|2446
5JCS|1|x|A|2447
5JCS|1|x|G|2448
5JCS|1|x|A|2449
5JCS|1|x|G|2450
5JCS|1|x|G|2451
5JCS|1|x|G|2452
5JCS|1|x|U|2453
5JCS|1|x|G|2454
5JCS|1|x|U|2455
5JCS|1|x|A|2456
5JCS|1|x|G|2457
5JCS|1|x|A|2458
5JCS|1|x|A|2459
5JCS|1|x|U|2460
5JCS|1|x|A|2461
5JCS|1|x|A|2462
5JCS|1|x|G|2463
5JCS|1|x|U|2464
5JCS|1|x|G|2465
5JCS|1|x|G|2466
5JCS|1|x|G|2467
5JCS|1|x|A|2468
5JCS|1|x|G|2469
5JCS|1|x|C|2470
5JCS|1|x|U|2471
5JCS|1|x|U|2472
5JCS|1|x|C|2473
5JCS|1|x|G|2474
5JCS|1|x|G|2475
5JCS|1|x|C|2476
5JCS|1|x|G|2477
5JCS|1|x|C|2478
5JCS|1|x|C|2479
5JCS|1|x|A|2480
5JCS|1|x|G|2481
5JCS|1|x|U|2482
5JCS|1|x|G|2483
5JCS|1|x|A|2484
5JCS|1|x|A|2485
5JCS|1|x|A|2486
5JCS|1|x|U|2487
5JCS|1|x|A|2488
5JCS|1|x|C|2489
5JCS|1|x|C|2490
5JCS|1|x|A|2491
5JCS|1|x|C|2492
5JCS|1|x|U|2493
5JCS|1|x|A|2494
5JCS|1|x|C|2495
5JCS|1|x|C|2496
5JCS|1|x|U|2497
5JCS|1|x|U|2498
5JCS|1|x|U|2499
5JCS|1|x|A|2500
5JCS|1|x|U|2501
5JCS|1|x|A|2502
5JCS|1|x|G|2503
5JCS|1|x|U|2504
5JCS|1|x|U|2505
5JCS|1|x|U|2506
5JCS|1|x|C|2507
5JCS|1|x|U|2508
5JCS|1|x|U|2509
5JCS|1|x|U|2510
5JCS|1|x|A|2511
5JCS|1|x|C|2512
5JCS|1|x|U|2513
5JCS|1|x|U|2514
5JCS|1|x|A|2515
5JCS|1|x|U|2516
5JCS|1|x|U|2517
5JCS|1|x|C|2518
5JCS|1|x|A|2519
5JCS|1|x|A|2520
5JCS|1|x|U|2521
5JCS|1|x|G|2522
5JCS|1|x|A|2523
5JCS|1|x|A|2524
5JCS|1|x|G|2525
5JCS|1|x|C|2526
5JCS|1|x|G|2527
5JCS|1|x|G|2528
5JCS|1|x|A|2529
5JCS|1|x|G|2530
5JCS|1|x|C|2531
5JCS|1|x|U|2532
5JCS|1|x|G|2533
5JCS|1|x|G|2534
5JCS|1|x|A|2535
5JCS|1|x|A|2536
5JCS|1|x|U|2537
5JCS|1|x|U|2538
5JCS|1|x|C|2539
5JCS|1|x|A|2540
5JCS|1|x|U|2541
5JCS|1|x|U|2542
5JCS|1|x|U|2543
5JCS|1|x|U|2544
5JCS|1|x|C|2545
5JCS|1|x|C|2546
5JCS|1|x|A|2547
5JCS|1|x|C|2548
5JCS|1|x|G|2549
5JCS|1|x|U|2550
5JCS|1|x|U|2551
5JCS|1|x|C|2552
5JCS|1|x|U|2553
5JCS|1|x|A|2554
5JCS|1|x|G|2555
5JCS|1|x|C|2556
5JCS|1|x|A|2557
5JCS|1|x|U|2558
5JCS|1|x|U|2559
5JCS|1|x|C|2560
5JCS|1|x|A|2561
5JCS|1|x|A|2562
5JCS|1|x|G|2563
5JCS|1|x|G|2564
5JCS|1|x|U|2565
5JCS|1|x|C|2566
5JCS|1|x|C|2567
*
5JCS|1|x|G|2574
5JCS|1|x|G|2575
5JCS|1|x|G|2576
5JCS|1|x|C|2577
5JCS|1|x|U|2578
5JCS|1|x|G|2579
5JCS|1|x|A|2580
5JCS|1|x|U|2581
5JCS|1|x|C|2582
5JCS|1|x|C|2583
5JCS|1|x|G|2584
5JCS|1|x|G|2585
5JCS|1|x|G|2586
5JCS|1|x|U|2587
5JCS|1|x|U|2588
5JCS|1|x|G|2589
5JCS|1|x|A|2590
5JCS|1|x|A|2591
5JCS|1|x|G|2592
5JCS|1|x|A|2593
5JCS|1|x|C|2594
5JCS|1|x|A|2595
5JCS|1|x|U|2596
5JCS|1|x|U|2597
5JCS|1|x|G|2598
5JCS|1|x|U|2599
5JCS|1|x|C|2600
5JCS|1|x|A|2601
5JCS|1|x|G|2602
5JCS|1|x|G|2603
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain I
- 60S ribosomal protein L1-A
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34-A
- Chain i
- 60S ribosomal protein L36-A
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: