IL_5JCS_084

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGUGAAGCC*GGUGGAGGCU

Length

19 nucleotides

Bulged bases

5JCS|1|x|G|860

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|G|832
5JCS|1|x|G|833
5JCS|1|x|U|834
5JCS|1|x|G|835
5JCS|1|x|A|836
5JCS|1|x|A|837
5JCS|1|x|G|838
5JCS|1|x|C|839
5JCS|1|x|C|840
*
5JCS|1|x|G|853
5JCS|1|x|G|854
5JCS|1|x|U|855
5JCS|1|x|G|856
5JCS|1|x|G|857
5JCS|1|x|A|858
5JCS|1|x|G|859
5JCS|1|x|G|860
5JCS|1|x|C|861
5JCS|1|x|U|862

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain R

60S ribosomal protein L19-A

Chain p

60S ribosomal protein L43-A