IL_5JCS_085
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGGGUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUU*GUGGACAUUUGAAUGAAG
- Length
- 113 nucleotides
- Bulged bases
- 5JCS|1|x|U|979, 5JCS|1|x|A|980, 5JCS|1|x|G|984, 5JCS|1|x|U|990, 5JCS|1|x|G|1001, 5JCS|1|x|A|1002, 5JCS|1|x|A|1006, 5JCS|1|x|U|1007, 5JCS|1|x|A|1025, 5JCS|1|x|A|1065, 5JCS|1|x|A|1093, 5JCS|1|x|U|1094, 5JCS|1|x|U|1095, 5JCS|1|x|A|1103
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JCS|1|x|C|977
5JCS|1|x|G|978
5JCS|1|x|U|979
5JCS|1|x|A|980
5JCS|1|x|U|981
5JCS|1|x|C|982
5JCS|1|x|A|983
5JCS|1|x|G|984
5JCS|1|x|U|985
5JCS|1|x|U|986
5JCS|1|x|U|987
5JCS|1|x|U|988
5JCS|1|x|A|989
5JCS|1|x|U|990
5JCS|1|x|G|991
5JCS|1|x|A|992
5JCS|1|x|G|993
5JCS|1|x|G|994
5JCS|1|x|U|995
5JCS|1|x|A|996
5JCS|1|x|A|997
5JCS|1|x|A|998
5JCS|1|x|G|999
5JCS|1|x|C|1000
5JCS|1|x|G|1001
5JCS|1|x|A|1002
5JCS|1|x|A|1003
5JCS|1|x|U|1004
5JCS|1|x|G|1005
5JCS|1|x|A|1006
5JCS|1|x|U|1007
5JCS|1|x|U|1008
5JCS|1|x|A|1009
5JCS|1|x|G|1010
5JCS|1|x|A|1011
5JCS|1|x|G|1012
5JCS|1|x|G|1013
5JCS|1|x|U|1014
5JCS|1|x|U|1015
5JCS|1|x|C|1016
5JCS|1|x|C|1017
5JCS|1|x|G|1018
5JCS|1|x|G|1019
5JCS|1|x|G|1020
5JCS|1|x|G|1021
5JCS|1|x|U|1022
5JCS|1|x|C|1023
5JCS|1|x|G|1024
5JCS|1|x|A|1025
5JCS|1|x|A|1026
5JCS|1|x|A|1027
5JCS|1|x|U|1028
5JCS|1|x|G|1029
5JCS|1|x|A|1030
5JCS|1|x|C|1031
5JCS|1|x|C|1032
5JCS|1|x|U|1033
5JCS|1|x|U|1034
5JCS|1|x|G|1035
5JCS|1|x|A|1036
5JCS|1|x|C|1037
5JCS|1|x|C|1038
5JCS|1|x|U|1039
5JCS|1|x|A|1040
5JCS|1|x|U|1041
5JCS|1|x|U|1042
5JCS|1|x|C|1043
5JCS|1|x|U|1044
5JCS|1|x|C|1045
5JCS|1|x|A|1046
5JCS|1|x|A|1047
5JCS|1|x|A|1048
5JCS|1|x|C|1049
5JCS|1|x|U|1050
5JCS|1|x|U|1051
5JCS|1|x|U|1052
5JCS|1|x|A|1053
5JCS|1|x|A|1054
5JCS|1|x|A|1055
5JCS|1|x|U|1056
5JCS|1|x|A|1057
5JCS|1|x|U|1058
5JCS|1|x|G|1059
5JCS|1|x|U|1060
5JCS|1|x|A|1061
5JCS|1|x|A|1062
5JCS|1|x|G|1063
5JCS|1|x|A|1064
5JCS|1|x|A|1065
5JCS|1|x|G|1066
5JCS|1|x|U|1067
5JCS|1|x|C|1068
5JCS|1|x|C|1069
5JCS|1|x|U|1070
5JCS|1|x|U|1071
*
5JCS|1|x|G|1087
5JCS|1|x|U|1088
5JCS|1|x|G|1089
5JCS|1|x|G|1090
5JCS|1|x|A|1091
5JCS|1|x|C|1092
5JCS|1|x|A|1093
5JCS|1|x|U|1094
5JCS|1|x|U|1095
5JCS|1|x|U|1096
5JCS|1|x|G|1097
5JCS|1|x|A|1098
5JCS|1|x|A|1099
5JCS|1|x|U|1100
5JCS|1|x|G|1101
5JCS|1|x|A|1102
5JCS|1|x|A|1103
5JCS|1|x|G|1104
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L7-A
- Chain J
- 60S ribosomal protein L11-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain q
- Ribosome assembly protein 4
- Chain r
- Protein SDA1
- Chain s
- Midasin
- Chain z
- 5S ribosomal RNA; 5S rRNA
Coloring options: