IL_5JCS_088

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GAGACGU*GCCCGUGAAAAUC

Length

20 nucleotides

Bulged bases

5JCS|1|x|C|1657, 5JCS|1|x|C|1793, 5JCS|1|x|G|1794, 5JCS|1|x|U|1795

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|G|1653
5JCS|1|x|A|1654
5JCS|1|x|G|1655
5JCS|1|x|A|1656
5JCS|1|x|C|1657
5JCS|1|x|G|1658
5JCS|1|x|U|1659
*
5JCS|1|x|G|1790
5JCS|1|x|C|1791
5JCS|1|x|C|1792
5JCS|1|x|C|1793
5JCS|1|x|G|1794
5JCS|1|x|U|1795
5JCS|1|x|G|1796
5JCS|1|x|A|1797
5JCS|1|x|A|1798
5JCS|1|x|A|1799
5JCS|1|x|A|1800
5JCS|1|x|U|1801
5JCS|1|x|C|1802

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain g

60S ribosomal protein L34-A

Chain p

60S ribosomal protein L43-A