IL_5JCS_091

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GCUUGUGGACU*GGACUACUUGC

Length

22 nucleotides

Bulged bases

5JCS|1|x|A|2026

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|G|1987
5JCS|1|x|C|1988
5JCS|1|x|U|1989
5JCS|1|x|U|1990
5JCS|1|x|G|1991
5JCS|1|x|U|1992
5JCS|1|x|G|1993
5JCS|1|x|G|1994
5JCS|1|x|A|1995
5JCS|1|x|C|1996
5JCS|1|x|U|1997
*
5JCS|1|x|G|2024
5JCS|1|x|G|2025
5JCS|1|x|A|2026
5JCS|1|x|C|2027
5JCS|1|x|U|2028
5JCS|1|x|A|2029
5JCS|1|x|C|2030
5JCS|1|x|U|2031
5JCS|1|x|U|2032
5JCS|1|x|G|2033
5JCS|1|x|C|2034

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain u

Probable metalloprotease ARX1