IL_5JCS_095

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUAUCAUACCGAAGCAGAAUUCGGUAAGCGUU*ACUAAUAG

Length

40 nucleotides

Bulged bases

5JCS|1|x|A|2887, 5JCS|1|x|G|2898, 5JCS|1|x|C|2899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|C|2885
5JCS|1|x|U|2886
5JCS|1|x|A|2887
5JCS|1|x|U|2888
5JCS|1|x|C|2889
5JCS|1|x|A|2890
5JCS|1|x|U|2891
5JCS|1|x|A|2892
5JCS|1|x|C|2893
5JCS|1|x|C|2894
5JCS|1|x|G|2895
5JCS|1|x|A|2896
5JCS|1|x|A|2897
5JCS|1|x|G|2898
5JCS|1|x|C|2899
5JCS|1|x|A|2900
5JCS|1|x|G|2901
5JCS|1|x|A|2902
5JCS|1|x|A|2903
5JCS|1|x|U|2904
5JCS|1|x|U|2905
5JCS|1|x|C|2906
5JCS|1|x|G|2907
5JCS|1|x|G|2908
5JCS|1|x|U|2909
5JCS|1|x|A|2910
5JCS|1|x|A|2911
5JCS|1|x|G|2912
5JCS|1|x|C|2913
5JCS|1|x|G|2914
5JCS|1|x|U|2915
5JCS|1|x|U|2916
*
5JCS|1|x|A|2930
5JCS|1|x|C|2931
5JCS|1|x|U|2932
5JCS|1|x|A|2933
5JCS|1|x|A|2934
5JCS|1|x|U|2935
5JCS|1|x|A|2936
5JCS|1|x|G|2937

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain H

60S ribosomal protein L9-A

Chain V

60S ribosomal protein L23-A

Chain o

Nucleolar GTP-binding protein 1