IL_5JCS_097

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

ACCGAGUAGUGUAGUG*CAUACGCGAAACU

Length

29 nucleotides

Bulged bases

5JCS|1|z|C|73, 5JCS|1|z|G|77, 5JCS|1|z|U|86

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|z|A|72
5JCS|1|z|C|73
5JCS|1|z|C|74
5JCS|1|z|G|75
5JCS|1|z|A|76
5JCS|1|z|G|77
5JCS|1|z|U|78
5JCS|1|z|A|79
5JCS|1|z|G|80
5JCS|1|z|U|81
5JCS|1|z|G|82
5JCS|1|z|U|83
5JCS|1|z|A|84
5JCS|1|z|G|85
5JCS|1|z|U|86
5JCS|1|z|G|87
*
5JCS|1|z|C|94
5JCS|1|z|A|95
5JCS|1|z|U|96
5JCS|1|z|A|97
5JCS|1|z|C|98
5JCS|1|z|G|99
5JCS|1|z|C|100
5JCS|1|z|G|101
5JCS|1|z|A|102
5JCS|1|z|A|103
5JCS|1|z|A|104
5JCS|1|z|C|105
5JCS|1|z|U|106

Current chains

Chain z

5S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L7-A

Chain S

60S ribosomal protein L20-A

Chain x

Large subunit ribosomal RNA; LSU rRNA