IL_5JPQ_006

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5JPQ|1|2|U|170

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JPQ_006 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.3438

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5JPQ|1|2|G|143
5JPQ|1|2|U|144
5JPQ|1|2|A|145
5JPQ|1|2|U|146
5JPQ|1|2|A|147
5JPQ|1|2|A|148
5JPQ|1|2|C|149
*
5JPQ|1|2|G|165
5JPQ|1|2|C|166
5JPQ|1|2|U|167
5JPQ|1|2|A|168
5JPQ|1|2|A|169
5JPQ|1|2|U|170
5JPQ|1|2|A|171
5JPQ|1|2|C|172

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

eS24

Chain r

eS6