IL_5JPQ_024

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JPQ_024 not in the Motif Atlas

Geometric match to IL_1KUQ_001

Geometric discrepancy: 0.3022

The information below is about IL_1KUQ_001

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

5JPQ|1|2|A|865
5JPQ|1|2|G|866
*
5JPQ|1|2|C|962
5JPQ|1|2|A|963
5JPQ|1|2|U|964
5JPQ|1|2|U|965

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain s

eS7

Chain v

uS15

Chain z

uS8