IL_5JPQ_025

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

GGGAC*GUUUUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JPQ_025 not in the Motif Atlas

Geometric match to IL_8VMB_003

Geometric discrepancy: 0.3998

The information below is about IL_8VMB_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

5JPQ|1|2|G|866
5JPQ|1|2|G|867
5JPQ|1|2|G|868
5JPQ|1|2|A|869
5JPQ|1|2|C|870
*
5JPQ|1|2|G|957
5JPQ|1|2|U|958
5JPQ|1|2|U|959
5JPQ|1|2|U|960
5JPQ|1|2|U|961
5JPQ|1|2|C|962

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain v

uS15