IL_5JTE_042

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JTE_042 not in the Motif Atlas

Geometric match to IL_5J7L_043

Geometric discrepancy: 0.167

The information below is about IL_5J7L_043

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5JTE|1|AA|G|993
5JTE|1|AA|A|994
5JTE|1|AA|C|995
5JTE|1|AA|A|996
5JTE|1|AA|U|997
*
5JTE|1|AA|A|1044
5JTE|1|AA|C|1045

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S14