IL_5JTE_112

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

5JTE|1|BA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JTE_112 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.1289

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

5JTE|1|BA|C|1319
5JTE|1|BA|C|1320
5JTE|1|BA|A|1321
5JTE|1|BA|A|1322
5JTE|1|BA|C|1323
*
5JTE|1|BA|G|1331
5JTE|1|BA|G|1332
5JTE|1|BA|G|1333

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L22

Chain BT

50S ribosomal protein L23