IL_5JTE_183

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

5JTE|1|BA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JTE_183 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1048

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

5JTE|1|BA|G|1666
5JTE|1|BA|G|1667
5JTE|1|BA|A|1668
5JTE|1|BA|A|1669
5JTE|1|BA|C|1670
5JTE|1|BA|U|1671
5JTE|1|BA|A|1672
5JTE|1|BA|G|1673
5JTE|1|BA|G|1674
*
5JTE|1|BA|C|1990
5JTE|1|BA|U|1991
5JTE|1|BA|G|1992
5JTE|1|BA|U|1993
5JTE|1|BA|C|1994

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14