IL_5JU8_023

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_023 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.5133

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5JU8|1|AA|G|450
5JU8|1|AA|A|451
5JU8|1|AA|A|452
5JU8|1|AA|G|453
5JU8|1|AA|G|454
5JU8|1|AA|G|455
*
5JU8|1|AA|C|477
5JU8|1|AA|A|478
5JU8|1|AA|U|479
5JU8|1|AA|U|480
5JU8|1|AA|G|481
5JU8|1|AA|A|482
5JU8|1|AA|C|483

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16