IL_5JU8_052

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

5JU8|1|AA|U|1159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_052 not in the Motif Atlas

Geometric match to IL_4LFB_050

Geometric discrepancy: 0.2052

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5JU8|1|AA|C|1158
5JU8|1|AA|U|1159
5JU8|1|AA|G|1160
5JU8|1|AA|C|1161
*
5JU8|1|AA|G|1175
5JU8|1|AA|A|1176
5JU8|1|AA|G|1177
5JU8|1|AA|G|1178
5JU8|1|AA|A|1179
5JU8|1|AA|A|1180
5JU8|1|AA|G|1181

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9