IL_5JU8_057

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5JU8|1|AA|C|1400, 5JU8|1|AA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_057 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1285

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5JU8|1|AA|C|1399
5JU8|1|AA|C|1400
5JU8|1|AA|G|1401
*
5JU8|1|AA|C|1501
5JU8|1|AA|A|1502
5JU8|1|AA|A|1503
5JU8|1|AA|G|1504

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AV

mRNA

Chain AX

Transfer RNA; tRNA