IL_5JU8_058

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_058 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.0711

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5JU8|1|AA|G|1401
5JU8|1|AA|C|1402
5JU8|1|AA|C|1403
5JU8|1|AA|C|1404
*
5JU8|1|AA|G|1497
5JU8|1|AA|U|1498
5JU8|1|AA|A|1499
5JU8|1|AA|A|1500
5JU8|1|AA|C|1501

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AV

mRNA

Chain AX

Transfer RNA; tRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA