IL_5JU8_059

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_059 not in the Motif Atlas

Geometric match to IL_4KZD_003

Geometric discrepancy: 0.116

The information below is about IL_4KZD_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5JU8|1|AA|G|1405
5JU8|1|AA|U|1406
5JU8|1|AA|C|1407
*
5JU8|1|AA|G|1494
5JU8|1|AA|U|1495
5JU8|1|AA|C|1496

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AV

mRNA

Chain AX

Transfer RNA; tRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA