IL_5JU8_060

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

5JU8|1|AA|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_060 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3066

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5JU8|1|AA|C|1407
5JU8|1|AA|A|1408
5JU8|1|AA|C|1409
*
5JU8|1|AA|G|1491
5JU8|1|AA|A|1492
5JU8|1|AA|A|1493
5JU8|1|AA|G|1494

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AV

mRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA