IL_5JU8_082

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5JU8|1|BA|G|801, 5JU8|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_082 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1167

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5JU8|1|BA|G|674
5JU8|1|BA|A|675
5JU8|1|BA|A|676
5JU8|1|BA|A|677
5JU8|1|BA|C|678
*
5JU8|1|BA|G|799
5JU8|1|BA|A|800
5JU8|1|BA|G|801
5JU8|1|BA|A|802
5JU8|1|BA|U|803
5JU8|1|BA|A|804
5JU8|1|BA|G|805
5JU8|1|BA|C|806

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15