IL_5JU8_128

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

5JU8|1|BA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_128 not in the Motif Atlas

Homologous match to IL_4WF9_065

Geometric discrepancy: 0.1296

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

5JU8|1|BA|A|1669
5JU8|1|BA|C|1670
5JU8|1|BA|U|1671
5JU8|1|BA|A|1672
5JU8|1|BA|G|1673
5JU8|1|BA|G|1674
*
5JU8|1|BA|C|1990
5JU8|1|BA|U|1991
5JU8|1|BA|G|1992
5JU8|1|BA|U|1993

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14