IL_5JU8_144

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

5JU8|1|BA|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_144 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.1085

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

5JU8|1|BA|A|2070
5JU8|1|BA|A|2071
*
5JU8|1|BA|U|2438
5JU8|1|BA|A|2439
5JU8|1|BA|C|2440
5JU8|1|BA|U|2441

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AX

Transfer RNA; tRNA

Chain B5

ErmBL

Chain BC

50S ribosomal protein L2