IL_5JU8_169

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

5JU8|1|BA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_169 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.097

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5JU8|1|BA|G|2737
5JU8|1|BA|A|2738
5JU8|1|BA|U|2739
5JU8|1|BA|A|2740
5JU8|1|BA|A|2741
5JU8|1|BA|G|2742
*
5JU8|1|BA|C|2762
5JU8|1|BA|G|2763
5JU8|1|BA|A|2764
5JU8|1|BA|A|2765
5JU8|1|BA|A|2766
5JU8|1|BA|C|2767

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6

Chain BJ

50S ribosomal protein L13