IL_5JU8_179

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_179 not in the Motif Atlas

Homologous match to IL_5J7L_359

Geometric discrepancy: 0.0837

The information below is about IL_5J7L_359

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5JU8|1|BB|C|71
5JU8|1|BB|G|72
5JU8|1|BB|A|73
5JU8|1|BB|U|74
5JU8|1|BB|G|75
5JU8|1|BB|G|76
5JU8|1|BB|U|77
5JU8|1|BB|A|78
5JU8|1|BB|G|79
*
5JU8|1|BB|C|97
5JU8|1|BB|G|98
5JU8|1|BB|A|99
5JU8|1|BB|G|100
5JU8|1|BB|A|101
5JU8|1|BB|G|102
5JU8|1|BB|U|103
5JU8|1|BB|A|104
5JU8|1|BB|G|105

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BM

50S ribosomal protein L16

Chain BV

50S ribosomal protein L25