IL_5JUO_042

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

5JUO|1|A|U|959

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUO_042 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.342

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5JUO|1|A|G|867
5JUO|1|A|G|868
5JUO|1|A|A|869
5JUO|1|A|C|870
*
5JUO|1|A|G|957
5JUO|1|A|U|958
5JUO|1|A|U|959
5JUO|1|A|U|960
5JUO|1|A|U|961

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain HA

eL30 (yeast L30)

Chain KB

uS15 (yeast S13)

Chain YB

eS27 (yeast S27)