IL_5JUO_047
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGGAUC*GUC
- Length
- 9 nucleotides
- Bulged bases (A, C, G, U)
- 987G
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_047 not in the Motif Atlas
- Homologous match to IL_4V88_435
- Geometric discrepancy: 0.5408
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5JUO|1|A|G|985
5JUO|1|A|G|986
5JUO|1|A|G|987
5JUO|1|A|A|988
5JUO|1|A|U|989
5JUO|1|A|C|990
*
5JUO|1|A|G|1014
5JUO|1|A|U|1015
5JUO|1|A|C|1016
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- uL2 (yeast L2)
- Chain LB
- uS11 (yeast S14)
- Chain UA
- eL43 (yeast L43)
- Chain XB
- eS26 (yeast S26)
Coloring options: