IL_5JUO_054

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

5JUO|1|A|G|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUO_054 not in the Motif Atlas

Homologous match to IL_4V88_442

Geometric discrepancy: 0.3357

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

5JUO|1|A|G|1149
5JUO|1|A|G|1150
5JUO|1|A|A|1151
*
5JUO|1|A|U|1627
5JUO|1|A|U|1628

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain EC

IRES

Chain XB

eS26 (yeast S26)