IL_5JUO_056
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CCUG*CGCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_056 not in the Motif Atlas
- Geometric match to IL_6CZR_168
- Geometric discrepancy: 0.3006
- The information below is about IL_6CZR_168
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67743.1
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 9
Unit IDs
5JUO|1|A|C|1173
5JUO|1|A|C|1174
5JUO|1|A|U|1175
5JUO|1|A|G|1176
*
5JUO|1|A|C|1463
5JUO|1|A|G|1464
5JUO|1|A|C|1465
5JUO|1|A|G|1466
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain NB
- uS9 (yeast S16)
- Chain PB
- uS13 (yeast S18)
- Chain QB
- eS19 (yeast S19)
- Chain RB
- uS10 (yeast S20)
Coloring options: