IL_5JUO_067
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUAC*GAG
- Length
- 7 nucleotides
- Bulged bases
- 5JUO|1|A|U|1340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_067 not in the Motif Atlas
- Homologous match to IL_4V88_455
- Geometric discrepancy: 0.2773
- The information below is about IL_4V88_455
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
5JUO|1|A|C|1339
5JUO|1|A|U|1340
5JUO|1|A|A|1341
5JUO|1|A|C|1342
*
5JUO|1|A|G|1383
5JUO|1|A|A|1384
5JUO|1|A|G|1385
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain NB
- uS9 (yeast S16)
- Chain OB
- eS17 (yeast S17)
- Chain RB
- uS10 (yeast S20)
- Chain WA
- RACK1 (yeast Asc1)
Coloring options: