IL_5JUO_082

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUO_082 not in the Motif Atlas

Homologous match to IL_4V88_470

Geometric discrepancy: 0.3339

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5JUO|1|A|U|1665
5JUO|1|A|U|1666
5JUO|1|A|A|1667
*
5JUO|1|A|U|1734
5JUO|1|A|U|1735
5JUO|1|A|G|1736

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AA

uL14 (yeast L23)

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain FB

eS8 (yeast S8)