IL_5JUO_083

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUO_083 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.2121

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5JUO|1|A|U|1669
5JUO|1|A|G|1670
5JUO|1|A|A|1671
5JUO|1|A|G|1672
*
5JUO|1|A|C|1729
5JUO|1|A|A|1730
5JUO|1|A|A|1731
5JUO|1|A|A|1732

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain BA

eL24 (yeast L24)

Chain DB

eS6 (yeast S6)

Chain FB

eS8 (yeast S8)