IL_5JUO_109

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

5JUO|1|B|U|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUO_109 not in the Motif Atlas

Homologous match to IL_5TBW_025

Geometric discrepancy: 0.3777

The information below is about IL_5TBW_025

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5JUO|1|B|A|755
5JUO|1|B|U|756
*
5JUO|1|B|A|775
5JUO|1|B|U|776
5JUO|1|B|U|777

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain GA

eL29 (yeast L29)

Chain Q

eL13 (yeast L13)

Chain V

eL18 (yeast L18)