IL_5JUO_142

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

5JUO|1|B|A|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUO_142 not in the Motif Atlas

Homologous match to IL_5TBW_060

Geometric discrepancy: 0.2868

The information below is about IL_5TBW_060

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5JUO|1|B|U|1398
5JUO|1|B|A|1399
5JUO|1|B|G|1400
*
5JUO|1|B|C|1411
5JUO|1|B|G|1412

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain J

eL6 (yeast L6)

Chain JA

eL32 (yeast L32)