IL_5JUO_148

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAAUG*CAGGAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|B|U|1645
5JUO|1|B|G|1646
5JUO|1|B|A|1647
5JUO|1|B|A|1648
5JUO|1|B|U|1649
5JUO|1|B|G|1650
*
5JUO|1|B|C|1805
5JUO|1|B|A|1806
5JUO|1|B|G|1807
5JUO|1|B|G|1808
5JUO|1|B|A|1809
5JUO|1|B|A|1810

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain EA

eL27 (yeast L27)

Chain F

uL2 (yeast L2)

Chain L

eL8 (yeast L8)

Chain LA

eL34 (yeast L34)