IL_5JUO_159
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 5JUO|1|B|U|1931
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_159 not in the Motif Atlas
- Geometric match to IL_5TBW_078
- Geometric discrepancy: 0.2225
- The information below is about IL_5TBW_078
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5JUO|1|B|C|1918
5JUO|1|B|G|1919
5JUO|1|B|U|1920
5JUO|1|B|A|1921
5JUO|1|B|A|1922
5JUO|1|B|C|1923
*
5JUO|1|B|G|1928
5JUO|1|B|G|1929
5JUO|1|B|A|1930
5JUO|1|B|U|1931
5JUO|1|B|A|1932
5JUO|1|B|A|1933
5JUO|1|B|G|1934
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain SA
- eL41 (yeast L41)
- Chain UA
- eL43 (yeast L43)
- Chain W
- eL19 (yeast L19)
Coloring options: