IL_5JUO_180
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUCC*GC
- Length
- 6 nucleotides
- Bulged bases
- 5JUO|1|B|C|2772
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_180 not in the Motif Atlas
- Homologous match to IL_5TBW_101
- Geometric discrepancy: 0.452
- The information below is about IL_5TBW_101
- Detailed Annotation
- Single stack bend
- Broad Annotation
- Single stack bend
- Motif group
- IL_39137.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5JUO|1|B|G|2770
5JUO|1|B|U|2771
5JUO|1|B|C|2772
5JUO|1|B|C|2773
*
5JUO|1|B|G|2787
5JUO|1|B|C|2788
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain FA
- uL15 (yeast L28)
- Chain Q
- eL13 (yeast L13)
- Chain TA
- eL42 (yeast L42)
- Chain V
- eL18 (yeast L18)
Coloring options: