IL_5JUO_195

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUUUGC*GCGAAG

Length

13 nucleotides

Bulged bases

5JUO|1|B|U|3056, 5JUO|1|B|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|B|U|3054
5JUO|1|B|U|3055
5JUO|1|B|U|3056
5JUO|1|B|U|3057
5JUO|1|B|U|3058
5JUO|1|B|G|3059
5JUO|1|B|C|3060
*
5JUO|1|B|G|3083
5JUO|1|B|C|3084
5JUO|1|B|G|3085
5JUO|1|B|A|3086
5JUO|1|B|A|3087
5JUO|1|B|G|3088

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain BA

eL24 (yeast L24)

Chain G

uL3 (yeast L3)

Chain IA

eL31 (yeast L31)