IL_5JUO_198

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCACAC*GCGUGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|B|C|3161
5JUO|1|B|C|3162
5JUO|1|B|A|3163
5JUO|1|B|C|3164
5JUO|1|B|A|3165
5JUO|1|B|C|3166
*
5JUO|1|B|G|3284
5JUO|1|B|C|3285
5JUO|1|B|G|3286
5JUO|1|B|U|3287
5JUO|1|B|G|3288
5JUO|1|B|G|3289

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain U

uL22 (yeast L17)