IL_5JUO_253

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUGUAAG*CUGAGA

Length

13 nucleotides

Bulged bases

5JUO|1|B|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|B|U|3331
5JUO|1|B|U|3332
5JUO|1|B|G|3333
5JUO|1|B|U|3334
5JUO|1|B|A|3335
5JUO|1|B|A|3336
5JUO|1|B|G|3337
*
5JUO|1|B|C|3367
5JUO|1|B|U|3368
5JUO|1|B|G|3369
5JUO|1|B|A|3370
5JUO|1|B|G|3371
5JUO|1|B|A|3372

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain BA

eL24 (yeast L24)

Chain G

uL3 (yeast L3)

Chain IA

eL31 (yeast L31)