IL_5JUO_254

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAUUGGUUACCCAUC*GUAAGGCUUUC

Length

27 nucleotides

Bulged bases

5JUO|1|EC|U|6768, 5JUO|1|EC|U|6775, 5JUO|1|EC|C|6777, 5JUO|1|EC|C|6778, 5JUO|1|EC|A|6780, 5JUO|1|EC|U|6781, 5JUO|1|EC|G|6819, 5JUO|1|EC|U|6823

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|EC|G|6767
5JUO|1|EC|U|6768
5JUO|1|EC|A|6769
5JUO|1|EC|U|6770
5JUO|1|EC|U|6771
5JUO|1|EC|G|6772
5JUO|1|EC|G|6773
5JUO|1|EC|U|6774
5JUO|1|EC|U|6775
5JUO|1|EC|A|6776
5JUO|1|EC|C|6777
5JUO|1|EC|C|6778
5JUO|1|EC|C|6779
5JUO|1|EC|A|6780
5JUO|1|EC|U|6781
5JUO|1|EC|C|6782
*
5JUO|1|EC|G|6814
5JUO|1|EC|U|6815
5JUO|1|EC|A|6816
5JUO|1|EC|A|6817
5JUO|1|EC|G|6818
5JUO|1|EC|G|6819
5JUO|1|EC|C|6820
5JUO|1|EC|U|6821
5JUO|1|EC|U|6822
5JUO|1|EC|U|6823
5JUO|1|EC|C|6824

Current chains

Chain EC

IRES

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain E

uL1 (yeast L1)